Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs10861204 | chr12:104739469 | A/G | 9.67E-13 | 177 | 1.37 | 15.8 | 15.48 | KM Plot |
| PAAD | rs10883594 | chr10:102936499 | C/G | 6.11E-8 | 173 | 15.62 | 13.6 | 3.17 | KM Plot |
| PAAD | rs10893418 | chr11:125582428 | G/A | 0.000112 | 177 | 16.08 | 14.18 | 5.03 | KM Plot |
| PAAD | rs10893421 | chr11:125614083 | G/A | 0.0001 | 178 | 15.95 | 12.2 | 4.1 | KM Plot |
| PAAD | rs10893428 | chr11:125670994 | C/A | 5.8E-5 | 178 | 15.95 | 12.2 | 4.1 | KM Plot |
| PAAD | rs10902053 | chr11:50751880 | T/C | 0 | 176 | 15.48 | 15.53 | 0.35 | KM Plot |
| PAAD | rs10903747 | chr10:2380746 | T/C | 0 | 174 | 0.4 | 15.33 | 15.62 | KM Plot |
| PAAD | rs10913431 | chr1:177778970 | A/G | 1.03E-6 | 178 | 4.27 | 18.48 | 15.43 | KM Plot |
| PAAD | rs10913544 | chr1:178350980 | C/T | 5.72E-5 | 178 | 15.77 | 10.27 | 43.32 | KM Plot |
| PAAD | rs10914671 | chr1:33723652 | C/T | 0.000153 | 175 | 4.52 | 16.13 | 15.48 | KM Plot |
| PAAD | rs10914677 | chr1:33749027 | G/A | 3.96E-6 | 171 | 4.92 | 16.1 | 15.57 | KM Plot |
| PAAD | rs10936625 | chr3:170094908 | G/T | 7.16E-5 | 178 | 15.77 | 15.4 | 7.9 | KM Plot |
| PAAD | rs10948186 | chr6:44903248 | C/T | 9.64E-5 | 178 | 16.22 | 16.12 | 11.98 | KM Plot |
| PAAD | rs10948222 | chr6:45244415 | T/C | 9.84E-5 | 174 | 16.37 | 16.1 | 12.2 | KM Plot |
| PAAD | rs11040475 | chr11:49709472 | G/A | 2.28E-5 | 175 | 15.4 | 15.72 | 0.4 | KM Plot |